Recent Advances in Biological Network Analysis

Recent Advances in Biological Network Analysis

This book reviews recent advances in the emerging field of computational network biology with special emphasis on comparative network analysis and network module detection.

Author: Byung-Jun Yoon

Publisher: Springer

ISBN: 3030571726

Category: Medical

Page: 217

View: 507

This book reviews recent advances in the emerging field of computational network biology with special emphasis on comparative network analysis and network module detection. The chapters in this volume are contributed by leading international researchers in computational network biology and offer in-depth insight on the latest techniques in network alignment, network clustering, and network module detection. Chapters discuss the advantages of the respective techniques and present the current challenges and open problems in the field. Recent Advances in Biological Network Analysis: Comparative Network Analysis and Network Module Detection will serve as a great resource for graduate students, academics, and researchers who are currently working in areas relevant to computational network biology or wish to learn more about the field. Data scientists whose work involves the analysis of graphs, networks, and other types of data with topological structure or relations can also benefit from the book's insights.
Categories: Medical

Recent Advances in Biological Network Analysis

Recent Advances in Biological Network Analysis

This book reviews recent advances in the emerging field of computational network biology with special emphasis on comparative network analysis and network module detection.

Author: Byung-Jun Yoon

Publisher: Springer Nature

ISBN: 9783030571733

Category: Medical

Page: 217

View: 483

This book reviews recent advances in the emerging field of computational network biology with special emphasis on comparative network analysis and network module detection. The chapters in this volume are contributed by leading international researchers in computational network biology and offer in-depth insight on the latest techniques in network alignment, network clustering, and network module detection. Chapters discuss the advantages of the respective techniques and present the current challenges and open problems in the field. Recent Advances in Biological Network Analysis: Comparative Network Analysis and Network Module Detection will serve as a great resource for graduate students, academics, and researchers who are currently working in areas relevant to computational network biology or wish to learn more about the field. Data scientists whose work involves the analysis of graphs, networks, and other types of data with topological structure or relations can also benefit from the book's insights.
Categories: Medical

Biological Network Analysis

Biological Network Analysis

As a wide variety of algorithms have been developed to analyze and compare networks, this book is a timely resource.

Author: Pietro Hiram Guzzi

Publisher: Academic Press

ISBN: 9780128193501

Category: Science

Page: 210

View: 943

Biological Network Analysis: Trends, Approaches, Graph Theory, and Algorithms considers three major biological networks, including Gene Regulatory Networks (GRN), Protein-Protein Interaction Networks (PPIN), and Human Brain Connectomes. The book's authors discuss various graph theoretic and data analytics approaches used to analyze these networks with respect to available tools, technologies, standards, algorithms and databases for generating, representing and analyzing graphical data. As a wide variety of algorithms have been developed to analyze and compare networks, this book is a timely resource. Presents recent advances in biological network analysis, combining Graph Theory, Graph Analysis, and various network models Discusses three major biological networks, including Gene Regulatory Networks (GRN), Protein-Protein Interaction Networks (PPIN) and Human Brain Connectomes Includes a discussion of various graph theoretic and data analytics approaches
Categories: Science

Emergence of Communication in Socio Biological Networks

Emergence of Communication in Socio Biological Networks

This book integrates current advances in biology, economics of information and linguistics research through applications using agent-based modeling and social network analysis to develop scenarios of communication and language emergence in ...

Author: Anamaria Berea

Publisher: Springer

ISBN: 9783319645650

Category: Science

Page: 88

View: 341

This book integrates current advances in biology, economics of information and linguistics research through applications using agent-based modeling and social network analysis to develop scenarios of communication and language emergence in the social aspects of biological communications. The book presents a model of communication emergence that can be applied both to human and non-human living organism networks. The model is based on economic concepts and individual behavior fundamental for the study of trust and reputation networks in social science, particularly in economics; it is also based on the theory of the emergence of norms and historical path dependence that has been influential in institutional economics. Also included are mathematical models and code for agent-based models to explore various scenarios of language evolution, as well as a computer application that explores language and communication in biological versus social organisms, and the emergence of various meanings and grammars in human networks. Emergence of Communication in Socio-Biological Networks offers both a completely novel approach to communication emergence and language evolution and provides a path for the reader to explore various scenarios of language and communication that are not constrained to the human networks alone. By illustrating how computational social science and the complex systems approach can incorporate multiple disciplines and offer an integrated theory-model approach to the evolution of language, the book will be of interest to researchers working with computational linguistics, mathematical linguistics, and complex systems.
Categories: Science

Biological Network Analysis

Biological Network Analysis

Trends, Approaches, Graph Theory, and Algorithms Pietro Hiram Guzzi, Swarup Roy ... Key features Presents recent advances in biological network analysis, ...

Author: Pietro Hiram Guzzi

Publisher: Elsevier

ISBN: 9780128193518

Category: Science

Page: 210

View: 373

Biological Network Analysis: Trends, Approaches, Graph Theory, and Algorithms considers three major biological networks, including Gene Regulatory Networks (GRN), Protein-Protein Interaction Networks (PPIN), and Human Brain Connectomes. The book's authors discuss various graph theoretic and data analytics approaches used to analyze these networks with respect to available tools, technologies, standards, algorithms and databases for generating, representing and analyzing graphical data. As a wide variety of algorithms have been developed to analyze and compare networks, this book is a timely resource. Presents recent advances in biological network analysis, combining Graph Theory, Graph Analysis, and various network models Discusses three major biological networks, including Gene Regulatory Networks (GRN), Protein-Protein Interaction Networks (PPIN) and Human Brain Connectomes Includes a discussion of various graph theoretic and data analytics approaches
Categories: Science

Functional Coherence of Molecular Networks in Bioinformatics

Functional Coherence of Molecular Networks in Bioinformatics

Research and method development for such analyses has grown tremendously in the past few years. This volume provides a detailed overview of existing knowledge on the functional characterization of biological networks.

Author: Mehmet Koyutürk

Publisher: Springer Science & Business Media

ISBN: 1461403200

Category: Science

Page: 228

View: 585

Molecular networks provide descriptions of the organization of various biological processes, including cellular signaling, metabolism, and genetic regulation. Knowledge on molecular networks is commonly used for systems level analysis of biological function; research and method development in this area has grown tremendously in the past few years. This book will provide a detailed review of existing knowledge on the functional characterization of biological networks. In 15 chapters authored by an international group of prolific systems biology and bioinformatics researchers, it will organize, conceptualize, and summarize the existing core of research results and computational methods on understanding biological function from a network perspective.
Categories: Science

Systemic Approaches in Bioinformatics and Computational Systems Biology Recent Advances

Systemic Approaches in Bioinformatics and Computational Systems Biology  Recent Advances

Recent Advances Lecca, Paola. Section 2 Chapter 6 The Present and the Future Perspectives of Biological Network Inference .

Author: Lecca, Paola

Publisher: IGI Global

ISBN: 9781613504369

Category: Medical

Page: 471

View: 839

The convergence of biology and computer science was initially motivated by the need to organize and process a growing number of biological observations resulting from rapid advances in experimental techniques. Today, however, close collaboration between biologists, biochemists, medical researchers, and computer scientists has also generated remarkable benefits for the field of computer science. Systemic Approaches in Bioinformatics and Computational Systems Biology: Recent Advances presents new techniques that have resulted from the application of computer science methods to the organization and interpretation of biological data. The book covers three subject areas: bioinformatics, computational biology, and computational systems biology. It focuses on recent, systemic approaches in computer science and mathematics that have been used to model, simulate, and more generally, experiment with biological phenomena at any scale.
Categories: Medical

Recent Advances in Rice Research

Recent Advances in Rice Research

Every gene in the network consists of gene ID, chromosome, start and stop position ... Analysis on network integration between SNPs and co-expressed genes ...

Author: Mahmood-Ur- Rahman Ansari

Publisher: BoD – Books on Demand

ISBN: 9781838810313

Category: Technology & Engineering

Page: 258

View: 613

“Recent Advances in Rice Research” is an interdisciplinary book dealing with diverse topics related to recent developments in rice research. The book discusses the latest research activities in the field of hybrid rice, various metabolites produced in rice and its biology, stress studies, and strategies to combat various biotic and abiotic stresses as well as rice economics, value addition, and product development. The book is written by an international team of researchers from all over the globe sharing their results in the field of rice research. I am hopeful that the scientific information available in this book will provide advanced knowledge for rice researchers, students, life scientists, and interested readers on some of the latest developments in rice research.
Categories: Technology & Engineering

Recent Advances in Scar Biology

Recent Advances in Scar Biology

We next applied enrichment analysis to the gene sets up-regulated in cells ... Corresponding transcriptional networks were subsequently generated for each ...

Author: Rei Ogawa

Publisher: MDPI

ISBN: 9783038973980

Category:

Page: 202

View: 795

This book is a printed edition of the Special Issue "Recent Advances in Scar Biology" that was published in IJMS
Categories:

Advances in Network Analysis and its Applications

Advances in Network Analysis and its Applications

The focus period FP-NETS: Focus Period on RecentAdvances in Networking ... Networks and Systems Biology, (6) Financial Networks and Risk Assessment, ...

Author: Evangelos Kranakis

Publisher: Springer Science & Business Media

ISBN: 9783642309045

Category: Mathematics

Page: 412

View: 559

As well as highlighting potentially useful applications for network analysis, this volume identifies new targets for mathematical research that promise to provide insights into network systems theory as well as facilitating the cross-fertilization of ideas between sectors. Focusing on financial, security and social aspects of networking, the volume adds to the growing body of evidence showing that network analysis has applications to transportation, communication, health, finance, and social policy more broadly. It provides powerful models for understanding the behavior of complex systems that, in turn, will impact numerous cutting-edge sectors in science and engineering, such as wireless communication, network security, distributed computing and social networking, financial analysis, and cyber warfare. The volume offers an insider’s view of cutting-edge research in network systems, including methodologies with immense potential for interdisciplinary application. The contributors have all presented material at a series of workshops organized on behalf of Canada’s MITACS initiative, which funds projects and study grants in ‘mathematics for information technology and complex systems’. These proceedings include papers from workshops on financial networks, network security and cryptography, and social networks. MITACS has shown that the partly ghettoized nature of network systems research has led to duplicated work in discrete fields, and thus this initiative has the potential to save time and accelerate the pace of research in a number of areas of network systems research.
Categories: Mathematics

Analysis of Biological Networks

Analysis of Biological Networks

NETWORK. ANALYSIS. Recent advances in high-throughput experimental technologies have resulted in a great body of information, which continue to grow ...

Author: Björn H. Junker

Publisher: John Wiley & Sons

ISBN: 9781118209912

Category: Computers

Page: 368

View: 230

An introduction to biological networks and methods for theiranalysis Analysis of Biological Networks is the first book of itskind to provide readers with a comprehensive introduction to thestructural analysis of biological networks at the interface ofbiology and computer science. The book begins with a brief overviewof biological networks and graph theory/graph algorithms and goeson to explore: global network properties, network centralities,network motifs, network clustering, Petri nets, signal transductionand gene regulation networks, protein interaction networks,metabolic networks, phylogenetic networks, ecological networks, andcorrelation networks. Analysis of Biological Networks is a self-containedintroduction to this important research topic, assumes no expertknowledge in computer science or biology, and is accessible toprofessionals and students alike. Each chapter concludes with asummary of main points and with exercises for readers to test theirunderstanding of the material presented. Additionally, an FTP sitewith links to author-provided data for the book is available fordeeper study. This book is suitable as a resource for researchers in computerscience, biology, bioinformatics, advanced biochemistry, and thelife sciences, and also serves as an ideal reference text forgraduate-level courses in bioinformatics and biologicalresearch.
Categories: Computers

Innovations in Smart Cities Applications Edition 3

Innovations in Smart Cities Applications Edition 3

The Nowadays, Networks in biology gained a lot of attention, due to recent advances in biological technologies. The massive data produced with these novel ...

Author: Mohamed Ben Ahmed

Publisher: Springer Nature

ISBN: 9783030376291

Category: Technology & Engineering

Page: 1266

View: 224

This book highlights original research and recent advances in various fields related to smart cities and their applications. It gathers papers presented at the Fourth International Conference on Smart City Applications (SCA19), held on October 2–4, 2019, in Casablanca, Morocco. Bringing together contributions by prominent researchers from around the globe, the book offers an invaluable instructional and research tool for courses on computer science, electrical engineering, and urban sciences. It is also an excellent reference guide for professionals, researchers, and academics in the field of smart cities. This book covers topics including: • Smart Citizenship • Smart Education • Digital Business and Smart Governance • Smart Health Care • New Generation of Networks and Systems for Smart Cities • Smart Grids and Electrical Engineering • Smart Mobility • Smart Security • Sustainable Building • Sustainable Environment
Categories: Technology & Engineering

Recent Advances in 3D Imaging Modeling and Reconstruction

Recent Advances in 3D Imaging  Modeling  and Reconstruction

A survey of visualization tools for biological network analysis. BioData Mining, 1(1), 12. doi:10.1186/1756-0381-1-12 PMID:19040716 Pein, R. P., Amador, M., ...

Author: Voulodimos, Athanasios

Publisher: IGI Global

ISBN: 9781522552956

Category: Computers

Page: 396

View: 635

3D image reconstruction is used in many fields, such as medicine, entertainment, and computer science. This highly demanded process comes with many challenges, such as images becoming blurry by atmospheric turbulence, getting snowed with noise, or becoming damaged within foreign regions. It is imperative to remain well-informed with the latest research in this field. Recent Advances in 3D Imaging, Modeling, and Reconstruction is a collection of innovative research on the methods and common techniques of image reconstruction as well as the accuracy of these methods. Featuring coverage on a wide range of topics such as ray casting, holographic techniques, and machine learning, this publication is ideally designed for graphic designers, computer engineers, medical professionals, robotics engineers, city planners, game developers, researchers, academicians, and students.
Categories: Computers

Network Biology

Network Biology

This book includes such theories and methods of network biology as methodology of social network analyses, construction of statistic networks, phylogenetic networks, multi-stable and oscillatory biological networks, creation of real ...

Author: Wenjun Zhang

Publisher: Nova Science Pub Incorporated

ISBN: 1626189420

Category: Science

Page: 206

View: 716

Biological network analysis is a fast moving science. Many core scientific issues; for example, ecological structure, coevolution, coextinction and biodiversity conservation in ecology, cancer development and metabolic regulation in health science, etc., are expected to be addressed by network analysis. Network analysis is becoming the core methodology to treat complex biological systems. With the quick development of this science, more and more papers on biological networks are published. This book includes such theories and methods of network biology as methodology of social network analyses, construction of statistic networks, phylogenetic networks, multi-stable and oscillatory biological networks, creation of real networks with expected degree distribution, forest ecosystem model, etc. Chapters are contributed by 15 scientists from the USA, Canada, New Zealand, China, Sweden, and Spain, in the areas of computational science and life sciences. It will provide researchers with various aspects of the latest advances in network biology. It is a valuable reference for scientists, university teachers and graduate students in biology, health science, ecology, social science, applied mathematics and computational science.
Categories: Science

Recent Advances in Soft Computing

Recent Advances in Soft Computing

Duijn, P.A., Klerks, P.P.: Social network analysis applied to criminal networks: recent developments in Dutch law enforcement. In: Masys, A.J. (ed.) ...

Author: Radek Matoušek

Publisher: Springer

ISBN: 9783319978888

Category: Computers

Page: 328

View: 857

This book presents selected papers from the MENDEL conference that was held in Brno, Czech Republic in June 2017. Consisting of two parts, the book discusses recent advances in soft computing, including intelligent image processing: Part 1 addresses evolutionary computing, swarm intelligence, metaheuristics, and optimization; Part 2 then focuses on neural networks, machine learning, self-organization, fuzzy systems, and advanced statistics. The MENDEL conference was established in 1995 and it bears the name of the scientist and Augustinian priest Gregor J. Mendel, who discovered the famous Laws of Heredity. The main aim of the conference was to create a regular opportunity for students, academics and researchers to exchange their ideas and novel research methods.
Categories: Computers

New Frontiers of Network Analysis in Systems Biology

New Frontiers of Network Analysis in Systems Biology

Recent advances and refinement of techniques for single cell cDNA amplification, quantitative real-time polymerase chain reaction (PCR), microarray analysis ...

Author: Avi Ma'ayan

Publisher: Springer Science & Business Media

ISBN: 9789400743304

Category: Medical

Page: 202

View: 286

The rapidly developing field of systems biology is influencing many aspects of biological research and is expected to transform biomedicine. Some emerging offshoots and specialized branches in systems biology are receiving particular attention and are becoming highly active areas of research. This collection of invited reviews describes some of the latest cutting-edge experimental and computational advances in these emerging sub-fields of systems biology. In particular, this collection focuses on the study of mammalian embryonic stem cells; new technologies involving mass-spectrometry proteomics; single cell measurements; methods for modeling complex stochastic systems; network-based classification algorithms; and the revolutionary emerging field of systems pharmacology.
Categories: Medical

Systems Biology and Biotechnology of Escherichia coli

Systems Biology and Biotechnology of Escherichia coli

Section 7.4 includes recent advance in network-biology especially about the dynamic aspect of bio-network analysis. Most of this chapter was taken from ...

Author: Sang Yup Lee

Publisher: Springer Science & Business Media

ISBN: 9781402093944

Category: Science

Page: 462

View: 575

Systems biology is changing the way biological systems are studied by allowing us to examine the cell and organism as a whole. Systems biotechnology allows optimal design and development of upstream to downstream bioprocesses by taking a systems-approach. E. coli has been a model organism for almost all biological and biotechnological studies. This book brings together for the first time the state-of-the-art reviews by the world-leading experts on systems biology and biotechnological applications of E. coli. The topics covered include genomics and functional genomics, resources for systems biology, network analysis, genome-scale metabolic reconstruction, modelling and simulation, dynamic modelling and simulation, systems-level analysis of evolution, plasmids and expression systems, protein synthesis, production and export, engineering the central metabolism, synthetic biology, and systems metabolic engineering of E. coli. This book provides readers with guidance on how a complex biological system can be studied using E. coli as a model organism. It also presents how to perform synthetic biology and systems metabolic engineering studies on E. coli with successful examples, the approaches of which can be extended to other organisms. This book will be a complete resource for anyone interested in systems biology and biotechnology.
Categories: Science

Recent Advances in Genetics and Breeding of Major Staple Food Crops

Recent Advances in Genetics and Breeding of Major Staple Food Crops

Shojaie, A.; Michailidis, G. Analysis of Gene Sets Based on the Underlying Regulatory Network. J. Comput. Biol. 2009, 16, 407–426. [CrossRef] [PubMed] 37.

Author: Joong Hyoun Chin

Publisher: MDPI

ISBN: 9783036509761

Category: Medical

Page: 314

View: 512

To meet the global food demand of an increasing population, food production has to be increased by 60% by 2050. The main production constraints, such as climate change, biotic stresses, abiotic stresses, soil nutrition deficiency problems, problematic soils, etc., have to be addressed on an urgent basis. More than 50% of human calories are from three major cereals: rice, wheat, and maize. The harnessing of genetic diversity by novel allele mining assisted by recent advances in biotechnological and bioinformatics tools will enhance the utilization of the hidden treasures in the gene bank. Technological advances in plant breeding will provide some solutions for the biofortification, stress resistance, yield potential, and quality improvement in staple crops. The elucidation of the genetic, physiological, and molecular basis of useful traits and the improvement of the improved donors containing multiple traits are key activities for variety development. High-throughput genotyping systems assisted by bioinformatics and data science provide efficient and easy tools for geneticists and breeders. Recently, new breeding techniques applied in some food crops have become game-changers in the global food crop market. With this background, we invited 18 eminent researchers working on food crops from across the world to contribute their high-quality original research manuscripts. The research studies covered modern food crop genetics and breeding: plant molecular systems focusing to food crops; plant genetic diversity—QTL and gene identification utilizing high-throughput genotyping systems and their validation; new breeding techniques in food crops—targeted mutagenesis, genome editing, etc.; abiotic and biotic stresses—QTL/gene identification and their molecular physiology; plant nutrition, grain quality improvement, and yield enhancement.
Categories: Medical

Elements of Computational Systems Biology

Elements of Computational Systems Biology

Elements of Computational Systems Biology is a comprehensive reference covering the computational frameworks and techniques needed to help research scientists and professionals in computer science, biology, chemistry, pharmaceutical science ...

Author: Huma M. Lodhi

Publisher: John Wiley & Sons

ISBN: 0470556749

Category: Computers

Page: 400

View: 673

Groundbreaking, long-ranging research in this emergent field that enables solutions to complex biological problems Computational systems biology is an emerging discipline that is evolving quickly due to recent advances in biology such as genome sequencing, high-throughput technologies, and the recent development of sophisticated computational methodologies. Elements of Computational Systems Biology is a comprehensive reference covering the computational frameworks and techniques needed to help research scientists and professionals in computer science, biology, chemistry, pharmaceutical science, and physics solve complex biological problems. Written by leading experts in the field, this practical resource gives detailed descriptions of core subjects, including biological network modeling, analysis, and inference; presents a measured introduction to foundational topics like genomics; and describes state-of-the-art software tools for systems biology. Offers a coordinated integrated systems view of defining and applying computational and mathematical tools and methods to solving problems in systems biology Chapters provide a multidisciplinary approach and range from analysis, modeling, prediction, reasoning, inference, and exploration of biological systems to the implications of computational systems biology on drug design and medicine Helps reduce the gap between mathematics and biology by presenting chapters on mathematical models of biological systems Establishes solutions in computer science, biology, chemistry, and physics by presenting an in-depth description of computational methodologies for systems biology Elements of Computational Systems Biology is intended for academic/industry researchers and scientists in computer science, biology, mathematics, chemistry, physics, biotechnology, and pharmaceutical science. It is also accessible to undergraduate and graduate students in machine learning, data mining, bioinformatics, computational biology, and systems biology courses.
Categories: Computers

Advances in Computational Biology

Advances in Computational Biology

Proceedings of The 2009 International Conference on Bioinformatics and Computational Biology in Las Vegas, NV, July 13-16, 2009. Recent advances in Computational Biology are covered through a variety of topics.

Author: Hamid R. Arabnia

Publisher: Springer Science & Business Media

ISBN: 1441959130

Category: Science

Page: 759

View: 467

Proceedings of The 2009 International Conference on Bioinformatics and Computational Biology in Las Vegas, NV, July 13-16, 2009. Recent advances in Computational Biology are covered through a variety of topics. Both inward research (core areas of computational biology and computer science) and outward research (multi-disciplinary, Inter-disciplinary, and applications) will be covered during the conferences. These include: Gene regulation, Gene expression databases, Gene pattern discovery and identification, Genetic network modeling and inference, Gene expression analysis, RNA and DNA structure and sequencing, Biomedical engineering, Microarrays, Molecular sequence and structure databases, Molecular dynamics and simulation, Molecular sequence classification, alignment and assembly, Image processing In medicine and biological sciences, Sequence analysis and alignment, Informatics and Statistics in Biopharmaceutical Research, Software tools for computational biology and bioinformatics, Comparative genomics; and more.
Categories: Science